• Bayesian Basket Trial Design

    • Xu Y, Müller P, Tsimberidou A, and Berry D., A Nonparametric Bayesian Basket Trial Design. Submitted. Code
  • DDPGPSurv

    • Xu Y, Peter Thall, William Hua, and Borje Andersson.
      Bayesian Nonparametric Survival Regression for Optimizing Precision Dosing of Intravenous Busulfan in Allogeneic Stem Cell Transplantation. R package Reference manual
  • Zodiac

    • Zhu Y*, Xu Y*, Helseth D*, Gulukota K, Yang S, Pesce L, Mitra R, Müller P, Sengupta S, Guo W, Silverstein J, Foster I, Parsad N, White K and Ji Y.
      Zodiac: A Comprehensive Depiction of Genetic Interactions in Cancer by Integrating TCGA Data. Manuscript
    • Journal of the National Cancer Institute.
  • BM-Map

    • Ji Y, Xu Y, Zhang Q, Tsui K-W, Yuan Y, Liang S and Liang H, BM-Map: Bayesian Mapping of Multireads for Next-Generation Sequencing Data. Biometrics, 2011 Dec; 67(4): 1215-24. Manuscript
    • Yuan Y, Norris C, Xu Y, Tsui KW, Ji Y and Liang H, BM-Map: an efficient software package for accurately allocating multireads of RNA-seq data. BMC Genomics, 2012, 13(Suppl 8): S9.
  • MAD-Bayes for Tumor Heterogeneity Download

    • Xu Y, Müller P, Yuan Y, Gulukota K and Ji Y, MAD Bayes for Tumor Heterogeneity Feature Allocation with Non-Normal Sampling. Manuscript
  • SUBA

    • Xu Y, Trippa L, Müller P and Ji Y, Subgroup-Based Adaptive (SUBA) Designs for Multi-Arm Biomarker Trial. Statistics in Biosciences. Manuscript. We are currently developing a user-friendly interface. Code is available upon request.